P

dr Małgorzata Dudkiewicz adiunkt tel: 59 32726


malgorzata_dudkiewicz(at)sggw(dot)pl

adiunkt w Katedrze Doświadczalnictwa i Bioinformatyki WRiB SGGW w Warszawie
strona domowa
specjalności:
Biologia, Statystyka, Bioinformatyka, Genomika

Lista publikacji:
[1] Kowalczuk M., Mackiewicz P., Mackiewicz D., Nowicka A., Dudkiewicz M., Dudek M.R., Cebrat S., ”DNA asymmetry and the replicational mutational pressure”, J. Appl. Genet. 42(4), 2001, pp. 553-577
[2] Mackiewicz P., Szczepanik D., Gierlik A., Kowalczuk M., Nowicka A., Dudkiewicz M., Dudek M.R., Cebrat S., ”The differential killing of genes by inversions in prokaryotic genomes”, J. Mol. Evol. 53, 2001, pp. 615-621
[3] Kowalczuk M., Mackiewicz P., Mackiewicz D., Nowicka A., Dudkiewicz M., Dudek M.R., Cebrat S., “High correlation between the turnover of nucleotides under mutational pressure and DNA composition”, BMC Evolutionary Biology 1, 2001, pp. 13-18
[4] Kowalczuk M., Mackiewicz P., Mackiewicz D., Nowicka A., Dudkiewicz M., Dudek M.R., Cebrat S., 2001, “Multiple base substitution corrections in DNA sequence evolution”. Int. J. Modern Phys. C, 12(7), 1043-1053.
[5] Mackiewicz P., Kowalczuk M., Mackiewicz D., Nowicka A., Dudkiewicz M., Łaszkiewicz A., Dudek M.R., Cebrat S., 2002, “How many protein-coding genes are there in the Saccharomyces cerevisiae genome?” Yeast 19(7), 619-629.
[6] Mackiewicz P., Kowalczuk M., Mackiewicz D., Nowicka A., Dudkiewicz M., Łaszkiewicz A., Dudek M.R., Cebrat S., 2002, “Replication associated mutational pressure generating long-range correlation in DNA”. Physica A: Statistical Mechanics and its Applications, 314 (1-4), 646-654.
[7] Nowicka A., Mackiewicz P., Dudkiewicz M., Mackiewicz D., Kowalczuk M., Cebrat S., Dudek M.R., 2003, “Correlation between mutation pressure, selection pressure, and occurrence of amino acids”. Lecture Notes in Computer Science, 2658, 650-657.
[8] Mackiewicz D., Mackiewicz P., Kowalczuk M., Dudkiewicz M., Dudek M.R., Cebrat S., 2003, “Rearrangements between Differently Replicating DNA strands in Asymmetric Bacterial Genomes”,  Acta Microbiologica Polonica, 52 (3), 245-261.
[9] Mackiewicz P., Mackiewicz D., Kowalczuk M., Dudkiewicz M., Dudek M.R., Cebrat S., 2003, “High divergence rate of sequences located on different DNA strands in closely related bacterial genomes”. Journal of Applied Genetics, 44 (4), 561-584
[10] Dudkiewicz M., Mackiewicz P., Nowicka A., Kowalczuk M., Mackiewicz D., Polak N., Smolarczyk K., Dudek M. R., Cebrat S., “Properities of the genetic code under directional, asymmetric mutational pressure”’ P. M. A. Sloot et al. (Eds.): Computational Conference - ICCS 2003, Melbourne and St. Petersburg, LNCS 2657, 2003, pp. 343-350
[11] Dudkiewicz M., Mackiewicz P., Nowicka A., Kowalczuk M., Mackiewicz D., Polak N., Smolarczyk K., Banaszak J., Dudek M. R., Cebrat S., “Correspondance between mutation and selection pressure and the genetic code degeneracy in the gene evolution”, FGCS 1167, 2004, pp. 1-7
[12] Nowicka A., Mackiewicz P., Dudkiewicz M., Mackiewicz D., Kowalczuk M., Banaszak J., Cebrat S., Dudek M.R., 2004, “Representation of mutation pressure and selection pressure by PAM matrices”. Applied Bioinformatics, 3 (1), 31-39
[13] N.Polak, J.Banaszak, P.Mackiewicz, M.Dudkiewicz, M.Kowalczuk, D.Mackiewicz, K.Smolarczyk, A.Nowicka, M.R.Dudek, S.Cebrat, 2004, How Gene Survival Depends on Their Length. Lecture Notes in Computer Science, 3039, 694-699.
[14] Dudkiewicz M., Mackiewicz P., , Kowalczuk M., Mackiewicz D., Nowicka A., Polak N., Smolarczyk K., Dudek M. R., Cebrat S., “Simulation of gene evolution under directional mutational pressure”, Physica A 336, 2004, pp. 63-73
[15] Dudkiewicz M., Mackiewicz P., Kowalczuk M., Mackiewicz D., Nowicka A., Polak N., Smolarczyk K., Dudek M. R., Cebrat S, “Higher mutation rate helps to rescue genes from the elimination by selection, Biosystems 80, 2005, pp. 193-199
[16] Dudkiewicz M., Jankowski P., Nowicka A., Sikora R, Śliwka P, “Application of Markov chains in genome evolution analysis – some hints on Borrelia burgdorferi B31 genome”, Proceedings of the XII National Conference “Application of Mathematics to Biology and Medicine” 2006
[17] Lange A., Polak M., Dudkiewicz M., Kościńska K., Nowicka A., Bogunia-Kubik K., “Standardization of Donor-Recipient Matching in Transplantation”, Nova Science Publishers, Inc., Hauppage (USA) 2006; Section II: NATIONAL BONE MARROW DONOR REGISTRIES; Chapter 11 ACTIVITY OF THE NATIONAL POLISH BONE MARROW DONOR REGISTRY, pp. 93-101;
[18] Lange A., Polak M., Dudkiewicz M., Kościńska K., Pietraszek E.,”Patients fully matched (A*,B*,C*,DRB1*&DQB1*) at high resolution level have highest probability of survival post HSCT, Bone Marrow Transplantation, EBMT Annual Meeting, Hamburg 2006 
[19] Jakubska A., Dudkiewicz M., Jankowski P., Nowicka A., Sikora R., Śliwka P., “Mathematical estimation of Epipactis helleborine (L.) CRANTZ (ORCHIDACEAE) rhizome’s development”, Proceedings of the XII National Conference Application of Mathematics to Biology and Medicine, 2006
[20] Dudkiewicz M., Polak M., Kościńska K., Waligórski S., Bogunia-Kubik  K., Lange A.; “Działalność Krajowego Banku Dawców Szpiku”, 21.Kongres Polskiego Towarzystwa Hematologów i Transfuzjologów, Wisła, 8-10.09.2005, Acta Haematol. Polon., 2005,36, suppl. 2, 110.
[21] Lange A., Sędzimirska M., Suchnicki K., Lange J., Duda D., Nowak E., Kańska K., Dudkiewicz M., “Przeszczepienia komórek krwiotwórczych od dawców alternatywnych (103 przeszczepienia od dawców niespokrewnionych i 17 od haploidentycznych) - ośmioletnie doświadczenie DCTK z KBDSz”, 21.Kongres Polskiego Towarzystwa Hematologów i Transfuzjologów, Wisła 8-10. 09. 2005, Acta Haematol Polon, 2005, 36 (suppl.2), 191
[22] Dudek M. R., Cebrat S., Kowalczuk M., Mackiewicz P., Nowicka A., Mackiewicz D., Dudkiewicz M., “Information Weights of Nucleotides in DNA Sequences”, 2007, Computational Methods in Science and Technology, Vol. 13(1):5-12.
[23] Dudkiewicz M., Siminska J.,  Pawlowski K., Orzechowski S. “Bioinformatics Analysis of Oligosaccharide Phosphorylation Effect on the Stabilization of the β-Amylase Ligand Complex”. Journal of Carbohydrate Chemistry, Vol.27(8 & 9).2008 , pp.479 – 495
[24] Jakubska A., Dudkiewicz M., Jankowski P. and Sikora R.. “A mathematical method to estimate the underground development of the clonal species”. Colloquium Biometricum 38 (2008) , pp.185-192
[25] Sliwka P., Dudkiewicz M. “The Markov Chains (Markov Set-Chains) as a Tool for Bacterial Genomes Evolution Analysis”  BIOMAT 2008-International Symposium on Mathematical and Computational Biology, 2009, pp. 235-252 ISBN:   978-981-4271-81-3

[26] Jakubska-Busse A., Dudkiewicz M., Jankowski P., Sikora R. “Mathematical inference of the underground clonal growth of Epipactis helleborine (L.) Crantz (Orchidaceae, Neottieae)”.2009. Bot. Helv. 119:69–76; DOI 10.1007/s00035-009-0057-

[27] Czerwiński J., Antoszkiewicz K., Pszenny A., Malanowski P., Dudkiewicz M., Woderska A., Kobus G., Ciszek M., and Wałaszewski J.. „Present Data on Organ Donation and Transplantation in Poland”. 2009. Transplantation Proceedings, 41, pp. 2955–2958

[28] Dudkiewicz M.,  Malanowski P., Czerwiński J., Pawłowski K. “An Approach to Predicting Hematopoietic Stem Cell Transplantation Outcome Using HLA-Mismatch
Information Mapped on Protein Structure Data”. 2009. Biol Blood Marrow Transplant 15:1014-1025

[29] Piszczek E., Dudkiewicz M., Sobczak M., “Molecular cloning and structure modelling analysis of cereal type II metacaspase cDNA from wheat (Triticum aestivum)”. BIOLOGIA PLANTARUM 55 (4): 614-624, 2011

[30] Piszczek E., Dudkiewicz M., Mielecki M. Biochemical and Bioinformatic Characterization of Type II Metacaspase Protein (TaeMCAII) from Wheat Plant Mol Biol Rep (2012) 30:1338–1347

[31] Dudkiewicz M. and Piszczek E. Bacterial putative metacaspase structure from Geobacter sulfureducens as a template for homology modeling of type II Triticum aestivum metacaspase (TaeMCAII) Acta Biochimica PolonicaVol. 59, No 3/2012
401–406

[32] Dudkiewicz M, Szczepińska T, Grynberg M, Pawłowski K (2012) A Novel Protein Kinase-Like Domain in a Selenoprotein, Widespread in the Tree of Life. PLoS ONE 7(2): e32138. doi:10.1371/journal.pone.0032138

[33] Orzechowski S., Grabowska A., Sitnicka D. Siminska J. Felus M. Dudkiewicz M. Fudali S., Sobczak M. Analysis of the expression, subcellular and tissue localisation of phosphoglucan, water dikinase (PWD/GWD3) in Solanum tuberosum L.: a bioinformatics approach for the comparative analysis of two a-glucan, water dikinases (GWDs) from Solanum tuberosum L.  Acta Physiol Plant (2013) 35:483–500

[34]Dudkiewicz M, Lenart A, Pawłowski K (2013) A Novel Predicted Calcium-Regulated Kinase Family Implicated in Neurological Disorders. PLoS ONE 8(6): e66427. doi:10.1371/journal.pone.0066427

[35]Lenart A, Dudkiewicz M, Grynberg M, Pawłowski K (2013) CLCAs - A Family of Metalloproteases of Intriguing Phylogenetic Distribution and with Cases of Substituted Catalytic Sites. PLoS ONE 8(5): e62272. doi:10.1371/journal.pone.0062272

[36] ŚLIWKA P. and DUDKIEWICZ M.(2013) HOW TO IDENTIFY LATERALLY TRANSFERRED GENES?. Symmetries and Groups in Contemporary Physics: pp. 237-242. doi: 10.1142/9789814518550_0029